Datasets:

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imageomics

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2018-NEON-beetles

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HDR Imageomics Institute 135

This PR reorganizes the repository to be more straightforward:

• Removes mid-process images from Separate_segmented_train_test_splits_80_20/: group_images_masks/ and separate_segmented_beetle_images/.
• Adds Separate_segmented_train_test_splits_80_20/README.md explaining this subset and linking to a commit where both the intermediate step folders existed. Include full citation (with DOI) for that version of the dataset (including on SST repo which uses this).
• Renames beetle_images_resized/ to group_images_resized/ so relationship is clearer.
  • Metadata appropriately adjusted to keep dataset viewer functional. Specifically, the file_name column in beetle_images_resized/metadata.csv needs to be updated from beetle_images_resized/<img-filename> to group_images_resized/<img-filename.
• Updates the Dataset Structure section of the README to explain remaining components ("subsets") of this dataset.
• Removes individual_metadata.csv (check for pointers elsewhere to maintain record if needed).
• Updates Citation appropriately.

We also need to update the citation (will be done on this branch and we'll back-to-back merge #25, then this one).

The individual_metadata.csv file is this file in the processing repo.

It is described in the data fields section of the README in Revision 7b3731d.

@mridulk please see the updated description for our re-organization. I also endeavored to add more clarification for each subset.

Comment : "Metadata appropriately adjusted to keep dataset viewer functional. Specifically, the file_name column in beetle_images_resized/metadata.csv needs to be updated from beetle_images_resized/<img-filename> to group_images_resized/<img-filename>."

Ans- The file_name is currently in the format of just having the pictureID so keeping it as is

Comment : "Metadata appropriately adjusted to keep dataset viewer functional. Specifically, the file_name column in beetle_images_resized/metadata.csv needs to be updated from beetle_images_resized/<img-filename> to group_images_resized/<img-filename>."

Ans- The file_name is currently in the format of just having the pictureID so keeping it as is

Ah, yes, because the metadata file was moved into the folder.

@mridulk , I think this and #25 should be ready. Please review