app.py

# -*- coding: utf-8 -*- Nour Eddine Zekaoui et al.

import os
import torch
import spaces
import gradio as gr

from peft import PeftModel
from transformers import (
    AutoTokenizer,
    BitsAndBytesConfig,
    AutoModelForCausalLM)


# Set an environment variable
HF_TOKEN = os.environ.get("HF_TOKEN")

def generate_prompt(instruction, input=None):
    if input:
        return f"""Below is an instruction that describes a task, paired with an input that provides further context. Write a response that appropriately completes the request.  # noqa: E501

### Instruction:
{instruction}

### Input:
{input}

### Response:
"""
    else:
        return f"""Below is an instruction that describes a task. Write a response that appropriately completes the request.  # noqa: E501

### Instruction:
{instruction}

### Response:
"""

based_model_path = "meta-llama/Meta-Llama-3-8B"
lora_weights = "NouRed/BioMed-Tuned-Llama-3-8b"

load_in_4bit=True
bnb_4bit_use_double_quant=True
bnb_4bit_quant_type="nf4"
bnb_4bit_compute_dtype=torch.bfloat16
device = torch.device("cuda" if torch.cuda.is_available() else "cpu")


tokenizer = AutoTokenizer.from_pretrained(
    based_model_path,
    )

tokenizer.padding_side = 'right'
tokenizer.pad_token = tokenizer.eos_token
tokenizer.add_eos_token = True


quantization_config = BitsAndBytesConfig(
    load_in_4bit=load_in_4bit,
    bnb_4bit_use_double_quant=bnb_4bit_use_double_quant,
    bnb_4bit_quant_type=bnb_4bit_quant_type,
    bnb_4bit_compute_dtype=bnb_4bit_compute_dtype
)

base_model = AutoModelForCausalLM.from_pretrained(
    based_model_path,
    device_map="auto",
    attn_implementation="flash_attention_2", # I have an A100 GPU with 40GB of RAM 😎
    quantization_config=quantization_config,
    )

model = PeftModel.from_pretrained(
    base_model,
    lora_weights,
    torch_dtype=torch.float16,
    )


@spaces.GPU
def generate(
    instruction,
    input=None,
    temperature=0.1,
    top_p=0.9,
    top_k=40,
    num_beams=4,
    max_new_tokens=128,
    do_sample=True,
    **kwargs):

  prompt = generate_prompt(instruction, input)
  inputs = tokenizer(prompt, return_tensors="pt").to(device)

  with torch.no_grad():
    generated_ids = model.generate(
      **inputs,
      top_p=top_p,
      top_k=top_k,
      do_sample=do_sample,
      max_new_tokens=max_new_tokens,
    )

  output = tokenizer.decode(
      generated_ids[0], 
      skip_special_tokens=True, 
      clean_up_tokenization_spaces=True
      )

  response = output.split("### Response:")[1].strip()

  return response


description = """
<div style="justify-content: center; text-align: center;">
    <div style="display: flex; justify-content: center; align-items: center; text-align: center;">
    <h2>
        <p> BioMed-LLaMa-3: Effecient Intruction Fine-Tuning in Biomedical Language</p>
    </h2>
    </div>
    <div style="display: flex; justify-content: center; align-items: center; text-align: center;">
        <a href="https://huggingface.co/NouRed/BioMed-Tuned-Llama-3-8b" target="_blank"><img src="https://img.shields.io/badge/🤗_Hugging_Face-BioMedLLaMa3-orange" alt="HF HUB"></a> &nbsp;&nbsp;
        <a href="https://colab.research.google.com/drive/1PDa8b5TqpAYxDVlF0Elv32KOM2kFaXJh" target="_blank"><img src="https://colab.research.google.com/assets/colab-badge.svg" alt="Inference Notebook"></a>
    </div>
</div>
"""


gr.Interface(
    fn=generate,
    inputs=[
        gr.components.Textbox(
            lines=2,
            label="Instruction",
            placeholder="Tell me about Covid-19?",
        ),
        gr.components.Textbox(lines=2, label="Input", placeholder="none"),
        gr.components.Slider(
            minimum=0, maximum=1, value=0.1, label="Temperature"
        ),
        gr.components.Slider(
            minimum=0, maximum=1, value=0.9, label="Top p"
        ),
        gr.components.Slider(
            minimum=0, maximum=100, step=1, value=40, label="Top k"
        ),
        gr.components.Slider(
            minimum=1, maximum=4, step=1, value=4, label="Beams"
        ),
        gr.components.Slider(
            minimum=1, maximum=2000, step=1, value=128, label="Max tokens"
        ),
        gr.components.Checkbox(
            value=True, label="Do Sample", info="Do you want to use sampling during text generation?"
        ),
    ],
    outputs=[
        gr.components.Textbox(
            lines=5,
            label="Output",
        )
    ],
    examples=[
        ["Suggest treatment for pneumonia", "", 0.1, 0.9, 40, 4, 128, True],
        ["I have a sore throat, slight cough, tiredness. should i get tested fro covid 19?", "", 0.1, 0.9, 40, 4, 128, True],
        ["Husband of this patient asked me how to treat premature ejaculation and how to increase her libido.", "", 0.1, 0.9, 40, 4, 128, True],
    ],
    theme="soft",
    description=description,  # noqa: E501
).launch()