Upload scripts/parse_barkai_checseq.R with huggingface_hub

scripts/parse_barkai_checseq.R

@@ -213,7 +213,7 @@ gse222268_meta = Biobase::pData(gse@phenoData) %>% as_tibble() %>%
          instrument_model, library_selection) %>%
   mutate(description = ifelse(description == "", library_selection, description)) %>%
   dplyr::rename(accession = geo_accession) %>%
-  select(-library_selection)
+  select(-library_selection, -instrument_model, -extract_protocol_ch1)
 
 gse222268_meta %>%
   write_parquet(here("/home/chase/code/hf/barkai_compendium/GSE222268_metadata.parquet"),
@@ -224,3 +224,5 @@ gse222268_meta %>%
                 )
   )
 
+
+