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Update app.py
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app.py
CHANGED
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@@ -14,8 +14,6 @@ import numpy as np
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import matplotlib.pyplot as plt
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import matplotlib.style as mplstyle
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from pathlib import Path
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# using a faster style for plotting
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mplstyle.use('fast')
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# Mapping of nucleotides to float coordinates
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mapping_easy = {
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@@ -857,12 +855,15 @@ with ui.navset_card_tab(id="tab"):
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############################################################# Plotting ########################################################
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here = Path(__file__).parent
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@render.plot
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def plot():
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#ds = load_dataset('Hack90/virus_tiny')
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df = pd.read_parquet('virus_ds.parquet')
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df = df[df['Organism_Name'].isin(input.virus_selector())]
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# group by virus
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grouped = df.groupby('Organism_Name')['Sequence'].apply(list)
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# plot the comparison
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fig = None
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if input.plot_type() == "2D Line":
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import matplotlib.pyplot as plt
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import matplotlib.style as mplstyle
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from pathlib import Path
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# Mapping of nucleotides to float coordinates
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mapping_easy = {
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############################################################# Plotting ########################################################
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here = Path(__file__).parent
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@render.plot
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import matplotlib as mpl
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def plot():
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#ds = load_dataset('Hack90/virus_tiny')
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df = pd.read_parquet('virus_ds.parquet')
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df = df[df['Organism_Name'].isin(input.virus_selector())]
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# group by virus
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grouped = df.groupby('Organism_Name')['Sequence'].apply(list)
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mpl.rcParams.update(mpl.rcParamsDefault)
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# plot the comparison
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fig = None
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if input.plot_type() == "2D Line":
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