Spaces:
Runtime error
Runtime error
Commit
·
ee5d942
1
Parent(s):
c0ef450
switched to new model name
Browse files
app.py
CHANGED
|
@@ -5,8 +5,8 @@ from transformers import AutoTokenizer, AutoModelForCausalLM
|
|
| 5 |
import gradio as gr
|
| 6 |
|
| 7 |
# ——— CONFIG ———
|
| 8 |
-
REPO_ID = "CodCodingCode/llama-3.1-8b-clinical"
|
| 9 |
-
SUBFOLDER = "checkpoint-
|
| 10 |
HF_TOKEN = os.getenv("HUGGINGFACE_HUB_TOKEN")
|
| 11 |
if not HF_TOKEN:
|
| 12 |
raise RuntimeError("Missing HUGGINGFACE_HUB_TOKEN in env")
|
|
@@ -179,23 +179,80 @@ class RoleAgent:
|
|
| 179 |
|
| 180 |
|
| 181 |
# === Agents ===
|
|
|
|
|
|
|
| 182 |
summarizer = RoleAgent(
|
| 183 |
-
role_instruction=
|
|
|
|
|
|
|
|
|
|
|
|
|
| 184 |
tokenizer=tokenizer,
|
| 185 |
model=model,
|
| 186 |
)
|
| 187 |
-
|
| 188 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 189 |
tokenizer=tokenizer,
|
| 190 |
model=model,
|
| 191 |
)
|
| 192 |
-
|
| 193 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 194 |
tokenizer=tokenizer,
|
| 195 |
model=model,
|
| 196 |
)
|
| 197 |
-
|
| 198 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 199 |
tokenizer=tokenizer,
|
| 200 |
model=model,
|
| 201 |
)
|
|
@@ -235,12 +292,12 @@ def simulate_interaction(user_input, conversation_history=None):
|
|
| 235 |
summary = sum_out["output"]
|
| 236 |
|
| 237 |
# Diagnose based on summary
|
| 238 |
-
diag_out =
|
| 239 |
diagnosis = diag_out["output"]
|
| 240 |
|
| 241 |
# Generate next question based on current understanding
|
| 242 |
q_in = f"Vignette: {summary}\nCurrent Estimated Diagnosis: {diagnosis}"
|
| 243 |
-
q_out =
|
| 244 |
|
| 245 |
# Add doctor's response to history
|
| 246 |
history.append(f"Doctor: {q_out['output']}")
|
|
|
|
| 5 |
import gradio as gr
|
| 6 |
|
| 7 |
# ——— CONFIG ———
|
| 8 |
+
REPO_ID = "CodCodingCode/llama-3.1-8b-clinical-v1.1"
|
| 9 |
+
SUBFOLDER = "checkpoint-2250"
|
| 10 |
HF_TOKEN = os.getenv("HUGGINGFACE_HUB_TOKEN")
|
| 11 |
if not HF_TOKEN:
|
| 12 |
raise RuntimeError("Missing HUGGINGFACE_HUB_TOKEN in env")
|
|
|
|
| 179 |
|
| 180 |
|
| 181 |
# === Agents ===
|
| 182 |
+
# ——— Instantiate RoleAgents for each of your eight roles ———
|
| 183 |
+
|
| 184 |
summarizer = RoleAgent(
|
| 185 |
+
role_instruction=(
|
| 186 |
+
"“You are a clinical summarizer. Given a transcript of a doctor–patient dialogue, "
|
| 187 |
+
"extract a structured clinical vignette summarizing the key symptoms, relevant history, "
|
| 188 |
+
"and any diagnostic clues.”"
|
| 189 |
+
),
|
| 190 |
tokenizer=tokenizer,
|
| 191 |
model=model,
|
| 192 |
)
|
| 193 |
+
|
| 194 |
+
treatment_agent = RoleAgent(
|
| 195 |
+
role_instruction=(
|
| 196 |
+
"You are a board-certified clinician. Based on the provided diagnosis and patient vignette, "
|
| 197 |
+
"propose a realistic, evidence-based treatment plan suitable for initiation by a primary care "
|
| 198 |
+
"physician or psychiatrist."
|
| 199 |
+
),
|
| 200 |
tokenizer=tokenizer,
|
| 201 |
model=model,
|
| 202 |
)
|
| 203 |
+
|
| 204 |
+
diagnoser_early = RoleAgent(
|
| 205 |
+
role_instruction=(
|
| 206 |
+
"You are a diagnostic reasoning model (Early Stage). Based on the patient vignette and "
|
| 207 |
+
"early-stage observations, generate a list of plausible diagnoses with reasoning. Focus on "
|
| 208 |
+
"broad differentials, considering common and uncommon conditions."
|
| 209 |
+
),
|
| 210 |
tokenizer=tokenizer,
|
| 211 |
model=model,
|
| 212 |
)
|
| 213 |
+
|
| 214 |
+
diagnoser_middle = RoleAgent(
|
| 215 |
+
role_instruction=(
|
| 216 |
+
"You are a diagnostic reasoning model (Middle Stage). Given the current vignette, prior dialogue, "
|
| 217 |
+
"and diagnostic hypothesis, refine the list of possible diagnoses with concise justifications for each. "
|
| 218 |
+
"Aim to reduce diagnostic uncertainty."
|
| 219 |
+
),
|
| 220 |
+
tokenizer=tokenizer,
|
| 221 |
+
model=model,
|
| 222 |
+
)
|
| 223 |
+
|
| 224 |
+
diagnoser_late = RoleAgent(
|
| 225 |
+
role_instruction=(
|
| 226 |
+
"You are a diagnostic reasoning model (Late Stage). Based on the final patient vignette summary and full conversation, "
|
| 227 |
+
"provide the most likely diagnosis with structured reasoning. Confirm diagnostic certainty and include END if no more questioning is necessary."
|
| 228 |
+
),
|
| 229 |
+
tokenizer=tokenizer,
|
| 230 |
+
model=model,
|
| 231 |
+
)
|
| 232 |
+
|
| 233 |
+
questioner_early = RoleAgent(
|
| 234 |
+
role_instruction=(
|
| 235 |
+
"You are a questioning agent (Early Stage). Your task is to propose highly relevant early-stage questions "
|
| 236 |
+
"that can open the differential diagnosis widely. Use epidemiology, demographics, and vague presenting symptoms as guides."
|
| 237 |
+
),
|
| 238 |
+
tokenizer=tokenizer,
|
| 239 |
+
model=model,
|
| 240 |
+
)
|
| 241 |
+
|
| 242 |
+
questioner_middle = RoleAgent(
|
| 243 |
+
role_instruction=(
|
| 244 |
+
"You are a questioning agent (Middle Stage). Using the current diagnosis, past questions, and patient vignette, "
|
| 245 |
+
"generate a specific question to refine the current differential diagnosis. Return your reasoning and next question."
|
| 246 |
+
),
|
| 247 |
+
tokenizer=tokenizer,
|
| 248 |
+
model=model,
|
| 249 |
+
)
|
| 250 |
+
|
| 251 |
+
questioner_late = RoleAgent(
|
| 252 |
+
role_instruction=(
|
| 253 |
+
"You are a questioning agent (Late Stage). Based on narrowed differentials and previous dialogue, "
|
| 254 |
+
"generate a focused question that would help confirm or eliminate the final 1-2 suspected diagnoses."
|
| 255 |
+
),
|
| 256 |
tokenizer=tokenizer,
|
| 257 |
model=model,
|
| 258 |
)
|
|
|
|
| 292 |
summary = sum_out["output"]
|
| 293 |
|
| 294 |
# Diagnose based on summary
|
| 295 |
+
diag_out = diagnoser_middle.act(summary)
|
| 296 |
diagnosis = diag_out["output"]
|
| 297 |
|
| 298 |
# Generate next question based on current understanding
|
| 299 |
q_in = f"Vignette: {summary}\nCurrent Estimated Diagnosis: {diagnosis}"
|
| 300 |
+
q_out = questioner_middle.act(q_in)
|
| 301 |
|
| 302 |
# Add doctor's response to history
|
| 303 |
history.append(f"Doctor: {q_out['output']}")
|