Upload folder using huggingface_hub
Browse files- config.json +34 -0
- model.safetensors +3 -0
- optimizer_state_dict.pth +3 -0
- special_tokens_map.json +37 -0
- tokenizer.json +0 -0
- tokenizer_config.json +53 -0
- trainer_state.json +130 -0
- training_args.bin +3 -0
config.json
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{
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"_name_or_path": "zhihan1996/DNABERT-2-117M",
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"alibi_starting_size": 512,
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"architectures": [
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"BertForSequenceClassification"
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],
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"attention_probs_dropout_prob": 0.0,
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"auto_map": {
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"AutoConfig": "zhihan1996/DNABERT-2-117M--configuration_bert.BertConfig",
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"AutoModel": "zhihan1996/DNABERT-2-117M--bert_layers.BertModel",
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"AutoModelForMaskedLM": "zhihan1996/DNABERT-2-117M--bert_layers.BertForMaskedLM",
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"AutoModelForSequenceClassification": "zhihan1996/DNABERT-2-117M--bert_layers.BertForSequenceClassification"
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},
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"classifier_dropout": null,
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"gradient_checkpointing": false,
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"hidden_act": "gelu",
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"hidden_dropout_prob": 0.1,
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"hidden_size": 768,
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"initializer_range": 0.02,
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"intermediate_size": 3072,
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"layer_norm_eps": 1e-12,
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"max_position_embeddings": 512,
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"model_type": "bert",
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"num_attention_heads": 12,
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"num_hidden_layers": 12,
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"pad_token_id": 0,
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"position_embedding_type": "absolute",
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"problem_type": "single_label_classification",
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"torch_dtype": "float32",
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"transformers_version": "4.45.2",
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"type_vocab_size": 2,
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"use_cache": true,
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"vocab_size": 4096
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}
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model.safetensors
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version https://git-lfs.github.com/spec/v1
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oid sha256:58e9517e7a4d6788b4d7f7d7d091fa94b5ec9c50fe93a5d75cb4991e118a91ce
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size 468296408
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optimizer_state_dict.pth
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version https://git-lfs.github.com/spec/v1
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oid sha256:48a6ca920780aa3e815613431d8082056a732a6af01c812b00dbeddf0610a4c2
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size 936682546
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special_tokens_map.json
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{
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"cls_token": {
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"content": "[CLS]",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false
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},
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"mask_token": {
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"content": "[MASK]",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false
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},
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"pad_token": {
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"content": "[PAD]",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false
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},
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"sep_token": {
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"content": "[SEP]",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false
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},
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"unk_token": {
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"content": "[UNK]",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false
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}
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}
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tokenizer.json
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tokenizer_config.json
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{
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"added_tokens_decoder": {
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"0": {
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"content": "[UNK]",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false,
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"special": true
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},
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"1": {
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"content": "[CLS]",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false,
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"special": true
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},
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"2": {
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"content": "[SEP]",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false,
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"special": true
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},
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"3": {
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"content": "[PAD]",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false,
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"special": true
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},
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"4": {
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"content": "[MASK]",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false,
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"special": true
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}
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},
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"clean_up_tokenization_spaces": false,
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"cls_token": "[CLS]",
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"mask_token": "[MASK]",
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"model_max_length": 256,
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"pad_token": "[PAD]",
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"padding_side": "right",
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"sep_token": "[SEP]",
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"tokenizer_class": "PreTrainedTokenizerFast",
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"unk_token": "[UNK]"
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}
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trainer_state.json
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{
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"best_metric": 0.3388816714286804,
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"best_model_checkpoint": "output_pipe/H3/origin/checkpoint-400",
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"epoch": 4.0,
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"global_step": 752,
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"is_hyper_param_search": false,
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"is_local_process_zero": true,
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"is_world_process_zero": true,
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"log_history": [
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{
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{
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{
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"eval_precision": 0.8593835475000997,
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"eval_recall": 0.8542450050886496,
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"eval_runtime": 1.0296,
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"eval_samples_per_second": 1454.027,
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{
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{
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{
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},
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| 99 |
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{
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| 100 |
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"epoch": 4.0,
|
| 101 |
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"train_runtime": 63.2773,
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"train_steps_per_second": 11.884
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| 107 |
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}
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| 108 |
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],
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| 109 |
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"logging_steps": 100,
|
| 110 |
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"max_steps": 752,
|
| 111 |
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"num_input_tokens_seen": 0,
|
| 112 |
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"num_train_epochs": 4,
|
| 113 |
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"save_steps": 200,
|
| 114 |
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"stateful_callbacks": {
|
| 115 |
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"TrainerControl": {
|
| 116 |
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"args": {
|
| 117 |
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"should_epoch_stop": false,
|
| 118 |
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"should_evaluate": false,
|
| 119 |
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"should_log": false,
|
| 120 |
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"should_save": true,
|
| 121 |
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"should_training_stop": true
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| 122 |
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},
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| 123 |
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"attributes": {}
|
| 124 |
+
}
|
| 125 |
+
},
|
| 126 |
+
"total_flos": 3764005349807280.0,
|
| 127 |
+
"train_batch_size": 64,
|
| 128 |
+
"trial_name": null,
|
| 129 |
+
"trial_params": null
|
| 130 |
+
}
|
training_args.bin
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:10668afdc6c2167e2f97dd6e12539b3288fe9518621351c19e128cc09026db9f
|
| 3 |
+
size 5368
|