PathologyFindingsAnnotation.dtd

<!ENTITY name "PathologyFindingsAnnotation">

<!-- entity concept [CellAssociation] -->
<!ELEMENT CellAssociation ( #PCDATA ) >
<!ATTLIST CellAssociation type ( tissue|bone marrow|nuclear bone marrow|other ) #REQUIRED "other" >

<!-- entity concept [CellType] -->
<!ELEMENT CellType ( #PCDATA ) >
<!ATTLIST CellType cell ( B cell|T cell|lymphocyte|leucocyte|nuclear cell|plasma cell|dendritic cell|blast|myeloblast|megaloblast|erythroblast|normoblast|mikromegakaryocyte|megakaryocyte|mast cell|erythrocyte|thrombocyte|granulocyte|macrophage-histiocyte|Hodgkin-Reed-Sternberg cell|other-not specified ) #REQUIRED "" >
<!ATTLIST CellType isTumor ( Yes|No|Not mentioned ) #IMPLIED "Not mentioned" >

<!-- entity concept [Hematopoiesis] -->
<!ELEMENT Hematopoiesis ( #PCDATA ) >
<!ATTLIST Hematopoiesis type ( erythropoiesis|lymphopoiesis|megakaryopoiesis|granulopoiesis|monocytopoesis|other|not specified ) #REQUIRED "" >

<!-- entity concept [Expression] -->
<!ELEMENT Expression ( #PCDATA ) >

<!-- entity concept [ExpressionSignal] -->
<!ELEMENT ExpressionSignal ( #PCDATA ) >
<!ATTLIST ExpressionSignal expression_intensity ( weak|variable|strong ) #IMPLIED "" >

<!-- entity concept [MalignancySignal] -->
<!ELEMENT MalignancySignal ( #PCDATA ) >
<!ATTLIST MalignancySignal malignancy ( malignant|atypical|reactive|benign|negative ) #REQUIRED "" >

<!-- entity concept [PolaritySignal] -->
<!ELEMENT PolaritySignal ( #PCDATA ) >
<!ATTLIST PolaritySignal polarity ( positive|negative|uncertain ) #REQUIRED "" >

<!-- entity concept [QuantitySignal] -->
<!ELEMENT QuantitySignal ( #PCDATA ) >
<!ATTLIST QuantitySignal quantity #REQUIRED "" >

<!-- entity concept [AmountSignal] -->
<!ELEMENT AmountSignal ( #PCDATA ) >
<!ATTLIST AmountSignal extensiveness ( total|most|numerous|half|partial|few|none ) #IMPLIED "" >
<!ATTLIST AmountSignal change ( increased-hypercellular|normal-normocellular|decreased-hypocellular ) #IMPLIED "" >

<!-- entity concept [SizeSignal] -->
<!ELEMENT SizeSignal ( #PCDATA ) >
<!ATTLIST SizeSignal size ( small|medium|large|variable ) #REQUIRED "" >

<!-- entity concept [ClonalitySignal] -->
<!ELEMENT ClonalitySignal ( #PCDATA ) >
<!ATTLIST ClonalitySignal clonality ( monoclonal|polyclonal|light chain restriction ) #REQUIRED "" >
<!ATTLIST ClonalitySignal chain ( lambda|kappa ) #IMPLIED "" >

<!-- entity concept [ShiftSignal] -->
<!ELEMENT ShiftSignal ( #PCDATA ) >
<!ATTLIST ShiftSignal shift ( left shift|right shift ) #REQUIRED "" >

<!-- entity concept [Proliferation] -->
<!ELEMENT Proliferation ( #PCDATA ) >
<!ATTLIST Proliferation lowerValue #IMPLIED "" >
<!ATTLIST Proliferation upperValue #IMPLIED "" >

<!-- entity concept [HematoDiagnosis] -->
<!ELEMENT HematoDiagnosis ( #PCDATA ) >
<!ATTLIST HematoDiagnosis diagnosis ( chronic myeloic leucaemia BCR-ABL-1-positive | chronic myeloic leuceaemia| myeloproliferative neoplasm | Primary myelofibrosis | Prefibrotic early primary myelofibrosis | Classic Hodgkin Lymphoma |Nodular sclerosis classic Hodgkin lymphoma| Polycythaemia vera | myelodisplastic syndrom | myelodisplastic syndrom with excess blasts | diffuse large B-cell Lymphome | hairy cell leukaemia|plasma cell neoplasms|mantle cell lymphoma|Primary mediastinal thymic large B-cell lymphom|T-cell large granular lymphocytic leukaemia|Burkitt lymphoma|Primary amyloidosis|IgM Monoclonal gammopathy of undetermined significance|Acute myeloid leukaemia not otherwise specified|Plasma cell myeloma|Chronic lymphocytic leukaemia small lymphocytic lymphom|lymphoplasmacytic lymphoma|B-lymphoblastic leukaemia-lymphoma not otherwise specified|follicular lymphoma|T-lymphoblastic leukaemia lymphoma|Blastic plasmacytoid dendritic cell neoplasm|AL amyloidosis) #REQUIRED "" >

<!-- entity concept [OtherDiagnosis] -->
<!ELEMENT OtherDiagnosis ( #PCDATA ) >

<!-- entity concept [DiagnosisType] -->
<!ELEMENT DiagnosisType ( #PCDATA ) >
<!ATTLIST DiagnosisType type ( clinical diagnosis|differential diagnosis|pathology diagnosis|established diagnosis ) #REQUIRED "" >

<!-- entity concept [Infection] -->
<!ELEMENT Infection ( #PCDATA ) >
<!ATTLIST Infection agent ( CMV|EBV|other-not specified virus|fungus|bacteria|parasite ) #REQUIRED "" >

<!-- entity concept [Mutation] -->
<!ELEMENT Mutation ( #PCDATA ) >

<!-- entity concept [MorphologicAbnormality] -->
<!ELEMENT MorphologicAbnormality ( #PCDATA ) >
<!ATTLIST MorphologicAbnormality concept ( amyloid|fibrosis|apoptosis|inflammation|siderosis|osteopenia|necrosis ) #REQUIRED "" >

<!-- relation concept [RelationLink] -->
<!ELEMENT RelationLink EMPTY >
<!ATTLIST RelationLink arg0 IDREF prefix="from" #IMPLIED >
<!ATTLIST RelationLink arg1 IDREF prefix="to" #IMPLIED >

<!-- relation concept [AttributeLink] -->
<!ELEMENT AttributeLink EMPTY >
<!ATTLIST AttributeLink arg0 IDREF prefix="from" #IMPLIED >
<!ATTLIST AttributeLink arg1 IDREF prefix="to" #IMPLIED >

<!-- relation concept [IsSameLink] -->
<!ELEMENT IsSameLink EMPTY >
<!ATTLIST IsSameLink arg0 IDREF prefix="from" #IMPLIED >
<!ATTLIST IsSameLink arg1 IDREF prefix="to" #IMPLIED >

<!-- relation concept [ExLink] -->
<!ELEMENT ExLink EMPTY >
<!ATTLIST ExLink arg0 IDREF prefix="from" #IMPLIED >
<!ATTLIST ExLink arg1 IDREF prefix="to" #IMPLIED >
<!ATTLIST ExLink comparison_value ( greater than|lower than|equal to ) #REQUIRED "" >