Upload 7 files
Browse files- config.json +107 -0
- model.safetensors +3 -0
- special_tokens_map.json +37 -0
- tokenizer.json +0 -0
- tokenizer_config.json +55 -0
- training_args.bin +3 -0
- vocab.txt +0 -0
config.json
ADDED
|
@@ -0,0 +1,107 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"_name_or_path": "GerMedBERT/medbert-512",
|
| 3 |
+
"architectures": [
|
| 4 |
+
"BertForTokenClassification"
|
| 5 |
+
],
|
| 6 |
+
"attention_probs_dropout_prob": 0.1,
|
| 7 |
+
"classifier_dropout": null,
|
| 8 |
+
"hidden_act": "gelu",
|
| 9 |
+
"hidden_dropout_prob": 0.1,
|
| 10 |
+
"hidden_size": 768,
|
| 11 |
+
"id2label": {
|
| 12 |
+
"0": "B-Mutation",
|
| 13 |
+
"1": "B-ExpressionSignal",
|
| 14 |
+
"2": "B-PolaritySignal",
|
| 15 |
+
"3": "I-HematoDiagnosis",
|
| 16 |
+
"4": "I-MorphologicAbnormality",
|
| 17 |
+
"5": "B-Infection",
|
| 18 |
+
"6": "I-Infection",
|
| 19 |
+
"7": "I-Proliferation",
|
| 20 |
+
"8": "B-Hematopoiesis",
|
| 21 |
+
"9": "I-DiagnosisType",
|
| 22 |
+
"10": "I-CellAssociation",
|
| 23 |
+
"11": "B-SizeSignal",
|
| 24 |
+
"12": "I-ShiftSignal",
|
| 25 |
+
"13": "I-PolaritySignal",
|
| 26 |
+
"14": "O",
|
| 27 |
+
"15": "B-AmountSignal",
|
| 28 |
+
"16": "B-MalignancySignal",
|
| 29 |
+
"17": "I-SizeSignal",
|
| 30 |
+
"18": "I-OtherDiagnosis",
|
| 31 |
+
"19": "I-MalignancySignal",
|
| 32 |
+
"20": "B-Expression",
|
| 33 |
+
"21": "B-DiagnosisType",
|
| 34 |
+
"22": "B-Proliferation",
|
| 35 |
+
"23": "I-Expression",
|
| 36 |
+
"24": "B-QuantitySignal",
|
| 37 |
+
"25": "B-MorphologicAbnormality",
|
| 38 |
+
"26": "B-ShiftSignal",
|
| 39 |
+
"27": "B-HematoDiagnosis",
|
| 40 |
+
"28": "B-CellType",
|
| 41 |
+
"29": "B-OtherDiagnosis",
|
| 42 |
+
"30": "B-ClonalitySignal",
|
| 43 |
+
"31": "B-CellAssociation",
|
| 44 |
+
"32": "I-QuantitySignal",
|
| 45 |
+
"33": "I-Mutation",
|
| 46 |
+
"34": "I-Hematopoiesis",
|
| 47 |
+
"35": "I-CellType",
|
| 48 |
+
"36": "I-AmountSignal",
|
| 49 |
+
"37": "I-ClonalitySignal",
|
| 50 |
+
"38": "I-ExpressionSignal"
|
| 51 |
+
},
|
| 52 |
+
"initializer_range": 0.02,
|
| 53 |
+
"intermediate_size": 3072,
|
| 54 |
+
"label2id": {
|
| 55 |
+
"B-AmountSignal": 15,
|
| 56 |
+
"B-CellAssociation": 31,
|
| 57 |
+
"B-CellType": 28,
|
| 58 |
+
"B-ClonalitySignal": 30,
|
| 59 |
+
"B-DiagnosisType": 21,
|
| 60 |
+
"B-Expression": 20,
|
| 61 |
+
"B-ExpressionSignal": 1,
|
| 62 |
+
"B-HematoDiagnosis": 27,
|
| 63 |
+
"B-Hematopoiesis": 8,
|
| 64 |
+
"B-Infection": 5,
|
| 65 |
+
"B-MalignancySignal": 16,
|
| 66 |
+
"B-MorphologicAbnormality": 25,
|
| 67 |
+
"B-Mutation": 0,
|
| 68 |
+
"B-OtherDiagnosis": 29,
|
| 69 |
+
"B-PolaritySignal": 2,
|
| 70 |
+
"B-Proliferation": 22,
|
| 71 |
+
"B-QuantitySignal": 24,
|
| 72 |
+
"B-ShiftSignal": 26,
|
| 73 |
+
"B-SizeSignal": 11,
|
| 74 |
+
"I-AmountSignal": 36,
|
| 75 |
+
"I-CellAssociation": 10,
|
| 76 |
+
"I-CellType": 35,
|
| 77 |
+
"I-ClonalitySignal": 37,
|
| 78 |
+
"I-DiagnosisType": 9,
|
| 79 |
+
"I-Expression": 23,
|
| 80 |
+
"I-ExpressionSignal": 38,
|
| 81 |
+
"I-HematoDiagnosis": 3,
|
| 82 |
+
"I-Hematopoiesis": 34,
|
| 83 |
+
"I-Infection": 6,
|
| 84 |
+
"I-MalignancySignal": 19,
|
| 85 |
+
"I-MorphologicAbnormality": 4,
|
| 86 |
+
"I-Mutation": 33,
|
| 87 |
+
"I-OtherDiagnosis": 18,
|
| 88 |
+
"I-PolaritySignal": 13,
|
| 89 |
+
"I-Proliferation": 7,
|
| 90 |
+
"I-QuantitySignal": 32,
|
| 91 |
+
"I-ShiftSignal": 12,
|
| 92 |
+
"I-SizeSignal": 17,
|
| 93 |
+
"O": 14
|
| 94 |
+
},
|
| 95 |
+
"layer_norm_eps": 1e-12,
|
| 96 |
+
"max_position_embeddings": 512,
|
| 97 |
+
"model_type": "bert",
|
| 98 |
+
"num_attention_heads": 8,
|
| 99 |
+
"num_hidden_layers": 12,
|
| 100 |
+
"pad_token_id": 0,
|
| 101 |
+
"position_embedding_type": "absolute",
|
| 102 |
+
"torch_dtype": "float32",
|
| 103 |
+
"transformers_version": "4.36.2",
|
| 104 |
+
"type_vocab_size": 2,
|
| 105 |
+
"use_cache": true,
|
| 106 |
+
"vocab_size": 30000
|
| 107 |
+
}
|
model.safetensors
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:1434ace3f7dc46398eaa8ca9d893eeb50a8a3f73d61f7ca6838200f76056de99
|
| 3 |
+
size 434106316
|
special_tokens_map.json
ADDED
|
@@ -0,0 +1,37 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"cls_token": {
|
| 3 |
+
"content": "[CLS]",
|
| 4 |
+
"lstrip": false,
|
| 5 |
+
"normalized": false,
|
| 6 |
+
"rstrip": false,
|
| 7 |
+
"single_word": false
|
| 8 |
+
},
|
| 9 |
+
"mask_token": {
|
| 10 |
+
"content": "[MASK]",
|
| 11 |
+
"lstrip": false,
|
| 12 |
+
"normalized": false,
|
| 13 |
+
"rstrip": false,
|
| 14 |
+
"single_word": false
|
| 15 |
+
},
|
| 16 |
+
"pad_token": {
|
| 17 |
+
"content": "[PAD]",
|
| 18 |
+
"lstrip": false,
|
| 19 |
+
"normalized": false,
|
| 20 |
+
"rstrip": false,
|
| 21 |
+
"single_word": false
|
| 22 |
+
},
|
| 23 |
+
"sep_token": {
|
| 24 |
+
"content": "[SEP]",
|
| 25 |
+
"lstrip": false,
|
| 26 |
+
"normalized": false,
|
| 27 |
+
"rstrip": false,
|
| 28 |
+
"single_word": false
|
| 29 |
+
},
|
| 30 |
+
"unk_token": {
|
| 31 |
+
"content": "[UNK]",
|
| 32 |
+
"lstrip": false,
|
| 33 |
+
"normalized": false,
|
| 34 |
+
"rstrip": false,
|
| 35 |
+
"single_word": false
|
| 36 |
+
}
|
| 37 |
+
}
|
tokenizer.json
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
tokenizer_config.json
ADDED
|
@@ -0,0 +1,55 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"added_tokens_decoder": {
|
| 3 |
+
"0": {
|
| 4 |
+
"content": "[PAD]",
|
| 5 |
+
"lstrip": false,
|
| 6 |
+
"normalized": false,
|
| 7 |
+
"rstrip": false,
|
| 8 |
+
"single_word": false,
|
| 9 |
+
"special": true
|
| 10 |
+
},
|
| 11 |
+
"1": {
|
| 12 |
+
"content": "[UNK]",
|
| 13 |
+
"lstrip": false,
|
| 14 |
+
"normalized": false,
|
| 15 |
+
"rstrip": false,
|
| 16 |
+
"single_word": false,
|
| 17 |
+
"special": true
|
| 18 |
+
},
|
| 19 |
+
"2": {
|
| 20 |
+
"content": "[CLS]",
|
| 21 |
+
"lstrip": false,
|
| 22 |
+
"normalized": false,
|
| 23 |
+
"rstrip": false,
|
| 24 |
+
"single_word": false,
|
| 25 |
+
"special": true
|
| 26 |
+
},
|
| 27 |
+
"3": {
|
| 28 |
+
"content": "[SEP]",
|
| 29 |
+
"lstrip": false,
|
| 30 |
+
"normalized": false,
|
| 31 |
+
"rstrip": false,
|
| 32 |
+
"single_word": false,
|
| 33 |
+
"special": true
|
| 34 |
+
},
|
| 35 |
+
"4": {
|
| 36 |
+
"content": "[MASK]",
|
| 37 |
+
"lstrip": false,
|
| 38 |
+
"normalized": false,
|
| 39 |
+
"rstrip": false,
|
| 40 |
+
"single_word": false,
|
| 41 |
+
"special": true
|
| 42 |
+
}
|
| 43 |
+
},
|
| 44 |
+
"clean_up_tokenization_spaces": true,
|
| 45 |
+
"cls_token": "[CLS]",
|
| 46 |
+
"do_lower_case": false,
|
| 47 |
+
"mask_token": "[MASK]",
|
| 48 |
+
"model_max_length": 512,
|
| 49 |
+
"pad_token": "[PAD]",
|
| 50 |
+
"sep_token": "[SEP]",
|
| 51 |
+
"strip_accents": null,
|
| 52 |
+
"tokenize_chinese_chars": true,
|
| 53 |
+
"tokenizer_class": "BertTokenizer",
|
| 54 |
+
"unk_token": "[UNK]"
|
| 55 |
+
}
|
training_args.bin
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:60dbaf55c37030dd21903e380c216e55cdadfe26a9557b58e6cfabf6d35dd5c4
|
| 3 |
+
size 4728
|
vocab.txt
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|